microarray protocols Search Results


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Genome Explorations comparative genomic microarray protocols
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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Genome Explorations microarray protocols
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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NimbleGen Systems GmbH microarray hybridizations protocol
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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Operon Technologies Inc reverse transcription, microarrays protocol
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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MOgene Inc microarray protocols
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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Johns Hopkins HealthCare microarray protocols
MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for <t>comparative</t> genomic <t>microarray</t> analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .
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MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for comparative genomic microarray analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .

Journal: PLoS ONE

Article Title: Genetic Diversity among Enterococcus faecalis

doi: 10.1371/journal.pone.0000582

Figure Lengend Snippet: MLST-based dendrogram showing genetic relationship of all E. faecalis isolates in this study. Small yellow highlights indicate a serotyping type strain, while black boxes designate the five most common serotypes . Arrows designate isolates used for comparative genomic microarray analysis. Abbreviations are defined as follows: ST = sequence type; CPS = capsule type; PAI = pathogenicity island fragment outlined as letter designations in (A = nuc1 ; B = cylB ; C = esp ; D = hydrolase homolog similar to xylS ; E = psaA homolog; F = gls-24 like); A red letter B indicates strains that readily transfer cytolysin via mating; Ab R = antibiotic resistance; T = tetracycline resistance; TM = tetM +; TL = tetL +; E = ermB +; VA = vanA +; VB = vanB +; G = gentamicin resistant; C = cat+ ; A = blaZ +; CBH = bile salt hydrolase; GEL = gelatinase; CYL = cytolysin. More detailed strain information is listed in .

Article Snippet: All post-DNA isolation comparative genomic microarray protocols were performed by Genome Explorations, Inc., Memphis, TN.

Techniques: Microarray, Sequencing